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Get a congruified subset array from a phylo object

Source: R/datelife_internal.R
phylo_get_subset_array_congruify.Rd

Get a congruified subset array from a phylo object

Usage

phylo_get_subset_array_congruify(
  reference_tree,
  taxa,
  phy = NULL,
  dating_method = "PATHd8"
)

Arguments

reference_tree

A phylo object.

taxa

Vector of taxon names to get a subset for.

phy

A user tree to congruify as phylo object (ape).

dating_method

The method used for tree dating.

Value

A list with a patristic matrix array and a $problem if any.