Problematic chronograms from Open Tree of Life.

Usage

problems

Format

A list of trees with unmapped taxa

Source

http://opentreeoflife.org

Details

Before we developed tools to clean and map tip labels for our cached trees we found some trees that were stored with unmapped tip labels we extracted them and saved them to be used for testing functions. Generated with problems <- opentree_chronograms$trees[sapply(sapply(opentree_chronograms$trees, "[", "tip.label"), function(x) any(grepl("not.mapped", x)))] usethis::use_data(problems) opentree_chronograms object from commit https://github.com/phylotastic/datelife/tree/be894448f6fc437241cd0916fab45e84ac3e09c6

[", "tip.label"), function(x) any(grepl("not.mapped", x)))]: R:%22,%20%22tip.label%22),%20function(x)%20any(grepl(%22not.mapped%22,%20x)))