Core function to generate results
Usage
run(
input = c("Rhea americana", "Pterocnemia pennata", "Struthio camelus"),
format = "citations",
partial = "yes",
plot.width = 600,
plot.height = 600,
use_tnrs = "no",
opentree_chronograms = NULL
)Arguments
- input
A newick string or vector of taxa
- format
The output format
- partial
How to deal with trees that have a subset of taxa in the query
- plot.width
Width in pixels for output plot
- plot.height
Height in pixels for output plot
- use_tnrs
Whether to use OpenTree's TNRS for the input
- opentree_chronograms
The list of lists containing the input trees and other info