Take a tree with branch lengths and fix negative or zero length branches.
Source:R/tree_fix_brlen.R
tree_fix_brlen.RdTake a tree with branch lengths and fix negative or zero length branches.
Usage
tree_fix_brlen(
tree = NULL,
fixing_criterion = "negative",
fixing_method = 0,
ultrametric = TRUE
)Arguments
- tree
A tree either as a newick character string or as a
phyloobject.- fixing_criterion
A character vector specifying the type of branch length to be fixed: "negative" or "zero" (the number 0 is also allowed).
- fixing_method
A character vector specifying the method to fix branch lengths: "bladj", "mrbayes" or a number to be assigned to all branches meeting fixing_criterion
- ultrametric
Boolean indicating whether to force ultrametric or not.